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This look very much like an issue with your data, I would especially check for nan and columns that are always zero and the target variable. Changing the C code to avoiding a core dump in such situations is on my list. Getting a small dataset to see if we can automatically detect what causes is the issue is necessary (especially since you change the targets with one-vs-rest).
I'm getting the following with 0.2.9 (fresh pip install today):
I'm using the als.FMClassifier via a wrapper class for one-vs-rest classification:
The data I was using to fit the model is attached. I tried to get a smaller dataset, but I was having trouble producing it when I cut things out.
X_train_sparse_fit_issue.npy.zip
y_train_sparse_fit_issue.npy.zip
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