Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

IGV does not honour rbg value in bed12 file #1595

Open
duartemolha opened this issue Oct 8, 2024 · 3 comments
Open

IGV does not honour rbg value in bed12 file #1595

duartemolha opened this issue Oct 8, 2024 · 3 comments

Comments

@duartemolha
Copy link

duartemolha commented Oct 8, 2024

I have a bed12 file where i have indicated a rbg value on the 9th field

IGV displays the forward strand in the correct colour, but entries on the reverse strand get the default dark blue colour.

is there a way to prevent this behaviour?

#gffTags
chr17	7669621	7669741	name=entry1	0.23	-	7669621	7669741	0,0,0	1	120,	0,
chr17	7669660	7669780	name=entry2	0.17	+	7669660	7669780	0,0,0	1	120,	0,

according to this both entries should be colour in black (RGB 0,0,0) but only entry2 is

@duartemolha duartemolha changed the title IGV does not honour rbg value if bed12 file IGV does not honour rbg value in bed12 file Oct 8, 2024
@jrobinso
Copy link
Contributor

jrobinso commented Oct 8, 2024

What version of IGV are you using?

@duartemolha
Copy link
Author

2.18.4

@jrobinso
Copy link
Contributor

jrobinso commented Oct 8, 2024

I can't reproduce the issue with the data you provided. Here's what I see

Screenshot 2024-10-08 at 3 29 15 PM

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants