0.10.19 (November 22, 2024)

fix: fixing issues with multiprocessing on a Mac OS

0.10.18 (May 07, 2024)

[FIX]: only attempt to create the marginal photometry plot if photometry has been printed to the output file

0.10.17 (March 26, 2024)

[ADD] Added option to print LaTeX table in column-wise order (one parameter per row)
[MOD] Changing the default credible interval to be printed to the LaTeX table to 68%
[ADD] Added command line option to average or not the positive/negative errors printed in the output LaTeX table
[FIX]Fixing computationof LaTeX table when the summary catalogue has been computed flattening the columns
[FIX] Fixing command line options dependencies: some options require the option

0.10.16 (March 14, 2024)

[FIX] Fixed y-axis label (units) when plotting EWs vs line fluxes
[FIX] Spectral indices labels were not correctly printed when reading them from a JSON file

0.10.15 (February 27, 2024)

[FIX] Fixing error when line labels in the spectral indices configuration file do not match the keys in the JSON file

0.10.14 (February 27, 2024)

[FEAT] Adding feature to correctly plot upper/lower limits as uppper/lower facing triangles
[ADD] Adding option to specify the definition of the upper/lower limits in units of sigma

0.10.13 (February 13, 2024)

[FIX] Missing default (False) flag for --compute-summary option

0.10.12 (January 26, 2024)

[FIX] Fixing errors when no summary_config.json file is present

0.10.11 (January 24, 2024)

[FIX] Fixing passing a summary_config.json file to configure the summary catalogue computation

0.10.10 (January 24, 2024)

[FIX] Fixing case column names matching

0.10.9 (December 06, 2023)

[FIX] Fixing errors of filters with names longer than 20 characters

0.10.8 (November 22, 2023)

[ADD] Reordering the hdu extensions so that the POSTERIOR PDF extension is always checked first
[FIX] Other fix for upper-lower cases mismatches. [ADD] Also added a sanity check that all parameters for which we require a LaTeX table have been printed
[FIX] Fixing column names mismatch caused by upper/lower cases
[ADD] Added horizontal line to show the level of 0 flux
[ADD] Added two command line options to set the rotation of the x-axis labels and to set the y-range of the residuals

0.10.7 (November 10, 2023)

[FIX] Fixing error TypeError: Cannot compare structured or void to non-void arrays. and removing parameters not present in the result file being analyzed

0.10.6 (November 10, 2023)

[ADD] Allowing the params_names.json file to contain entries not present in the output file, for instance adjustable parameters not fitted for. This enables users to use a common params_names.json file for different Beagle parameter files

0.10.5 (November 10, 2023)

Merge branch 'feature/log_level' into develop
[ADD] Adding possibility to set logging level from command line

0.10.4 (October 13, 2023)

Merge branch 'fix/crontab' into develop
[ADD] Added check so that when --show-calibration-option is set the presence of a calibration polynomial is checked, to avoid encountering errors (this enable using the same pyp_beagle command for runs w and w/o calibration polynomial)
[FIX] numpyp.int --> int

0.10.3 (August 08, 2023)

Skip objects with all fluxes set to 0
Avoid using NaN or Inf as axes limits, fixes #54
Correctly dealing with observed spectra with negative errors, i.e. we now ignore the wl bins corresponding to negative errors

0.10.2 (April 28, 2023)

Removing undefined float64 data type

0.10.1 (April 25, 2023)

Version bump 0.10.0
Removed spurious print statements
Python 3.7 --> 3.8
Refactoring to the latest versions of numpy and matplotlib
Removing mandatory presence of json file to configure emission line labels
Enable units definition in spectral indices catalogue
Version bump 0.10.0
Python 3.7 --> 3.8
Refactoring to the latest versions of numpy and matplotlib
Removing mandatory presence of json file to configure emission line labels
Enable units definition in spectral indices catalogue
Version bump 0.9.13
Several cosmetic improvements to the way residuals are shown, in particular by introducing the possibility of showing residuals in absolute units, relative units, or in units of sigma
Show tick marks at integer locations
Added option to show different type of residuals: absolute, relative, or in units of sigma (default option)
Version bump 0.9.12
Bug fix: the '--show-line-labels' option was still creating issues for labels at the edges of the spectra
Version bump 0.9.11
Bug fix: emission lines labelling in marginal plots now works again
Updated requirements
Version bump 0.9.10
The options '--show-full-SED' and '--show-MAP-SED' now work well for the spectra marginal plots. A new '--n-full-SED' option has been added to define the number of full SED to overplot on the marginal plots
Version bump 0.9.9
Bug fix: residuals can be correctly computed even when the marginal wl array and the data wl array do not have the same size, fixes #52
Version bump 0.9.8
Removing unsupported 'papertype' option from matplotlib fig.savefig method
Update README.md
Version bump 0.9.7
Bug fix: an issue was introduced when adding support for the MAP solution in the summary catalogue, this fix closes #51
Bug fix: correctly dealing with log flux scale in the presence of negative or zero fluxes

0.10.0 (April 25, 2023)

Removed spurious print statements
Python 3.7 --> 3.8
Refactoring to the latest versions of numpy and matplotlib
Removing mandatory presence of json file to configure emission line labels
Enable units definition in spectral indices catalogue

0.9.13 (November 16, 2022)

Several cosmetic improvements to the way residuals are shown, in particular by introducing the possibility of showing residuals in absolute units, relative units, or in units of sigma
Show tick marks at integer locations
Added option to show different type of residuals: absolute, relative, or in units of sigma (default option)

0.9.12 (November 15, 2022)

Bug fix: the '--show-line-labels' option was still creating issues for labels at the edges of the spectra

0.9.11 (November 15, 2022)

Bug fix: emission lines labelling in marginal plots now works again
Updated requirements

0.9.10 (November 13, 2022)

The options '--show-full-SED' and '--show-MAP-SED' now work well for the spectra marginal plots. A new '--n-full-SED' option has been added to define the number of full SED to overplot on the marginal plots

0.9.9 (November 11, 2022)

Bug fix: residuals can be correctly computed even when the marginal wl array and the data wl array do not have the same size, fixes #52

0.9.8 (November 11, 2022)

Removing unsupported 'papertype' option from matplotlib fig.savefig method
Update README.md

0.9.7 (November 11, 2022)

Bug fix: an issue was introduced when adding support for the MAP solution in the summary catalogue, this fix closes #51
Bug fix: correctly dealing with log flux scale in the presence of negative or zero fluxes

0.9.6 (July 22, 2022)

Raise error whne unable to match object IDs and input spectra
Allow post-processing of spectra with redshift as an adjustable parametter, i.e. the redshift column can contain different values
Defining backend when on Mac OS

0.9.5 (July 22, 2022)

Adding some logging messages to ease debugging

0.9.4 (July 21, 2022)

Added new fields to the summary catalogue: the MAP value for each parameter, and the probability, likelihood and chi_square corresponding to the MAP solution. Also added the number of data points used in the fitting to ease the calculation of a pseudo reduceed chi_square. Closes #49
Added command-line options to overwrite existing files and to flatten the columns in the output FITS files
Replacing deprecated Astropy FITS clobber keyword, fixes #50

0.9.3 (May 03, 2022)

Fixing plotting of full SED (spectrum) on marginal plots for photometry. Units conversion (F_lambda to F_nu) was wrong (a regression that appeared at some point). Fixes #47
Remove Matplotlib deprecated option (see https://matplotlib.org/3.3.1/gallery/text_labels_and_annotations/usetex_baseline_test.html), fixes #48

0.9.2 (October 29, 2021)

Enabling setting wl units for photometry plots as well (via the --wl-units option)

0.9.1 (June 28, 2021)

Bug fix: now supporting negative fluxes (e.g. absorption lines)
Removed dependency on WeightedKDE since scipy.stats now supports weighted gaussian_kde

0.9.0 (June 14, 2021)

Merge pull request #46 from eclake/calibration_branch_new
removing print statements and fixing bugs
Update beagle_spectra.py
Update beagle_spectra.py
Update beagle_calibration_correction.py
adding calibration_correction plot

0.8.3 (May 04, 2021)

Removed dependencies which are already included in the Python Standard Library

0.8.2 (April 26, 2021)

Fixing wrong module imports, fixes #44

0.8.1 (April 26, 2021)

Modifying Github action badge
Editing Github workflow
Modifying the workflow to trigger the action at releases
Adding workflow badge
Changed Github workflow path and file name

0.8.0 (April 26, 2021)

Merge branch 'feature/github_actions' into develop
Removing Shippable file
Modifying Github actions workflow
Editing Github workflow/actions
Updated requirements
Adding directory for Github actions

0.7.4 (March 23, 2021)

Fixing some Python 3 conversion issues
Corrected a wrong import
Enabling reading the ID column name of a photometric catalogue from the filters configuration file (it can still be overridden through the command line argument)

0.7.3 (March 22, 2021)

Trying to solve CI error: can't find Rust compiler

0.7.2 (March 22, 2021)

RuntimeError: latex was not able to process the following string:b'lp' solved following https://stackoverflow.com/a/32020370, i.e. redefining the minus sign in the preamble
Recognizing use of env variables in the filters definition; skipping the header line in the ASCII filter transmission files
Trying to solve a LaTeX error RuntimeError: latex was not able to process the following string: b'lp' using hints from here garrettj403/SciencePlots#2 and here https://stackoverflow.com/a/53080504
Adding LaTex use through our matplotlib configuration
Updated env variables
Updating README
Adding missing import; adding configparser option since the default option has changed

0.7.1 (January 21, 2021)

Python 3.8 not yet available on Shippable, using 3.7 instead
Updating README to reflect move to Python 3

0.7.0 (January 21, 2021)

Merge branch 'python_3' into develop
Moving to support of Python 3 (3.8) exclusively
Updated setup for Python 3
Updated modules for Python 3

0.6.6 (July 16, 2019)

Fix pypi failure: specifying that the README is in Markdown format, otherwise pushing to pypi fails, see https://pypi.org/help/#description-content-type and https://github.com/di/markdown-description-example
Bug fix: the marginal photometry plot was failing when the filter configuration file contained bands not present in the observations, but only computed for the models
Added option to specify flux units for photometry
Update README.md

0.6.5 (April 05, 2019)

Read object redshift from the Beagle output file, so that pyp_beagle correctly deals with redshifts when provided in the prior catalogue; correctly plots masked regions read from the 'MARGINAL SED MASK' extension
Correctly identify object ID from Beagle output file name
Cosmetics improvements to the marginal photometry plot

0.6.4 (March 27, 2019)

Introduced option to overplot on a photometric SED the maximum-a-posteriori (MAP) spectrum
Exploiting the *args and **kwargs appraoches to simplify the passing of command-line arguments to the different classes

0.6.3 (March 08, 2019)

Bug fix: file names of spectra and object IDs were not correctly matched

0.6.2 (February 28, 2019)

Correctly dealing with lines not observed (i.e. negative fluxes and errors in the observed catalogue)

0.6.1 (February 28, 2019)

Implemented option to print the values of observed and model fluxes on the plot
Removed unused function
Changed parser variable name
Cosmetics: added dotted lines linking symbols in the plot to the line labels on the x-axis

0.6.0 (February 27, 2019)

Merge branch 'feature/spectral_indices' into develop
Added SpectralIndices module
Finished integration of module to plot spectral indices (integrated line fluxes and EWs)
Added option to print values of line fluxes in the output image
Started integrating the new 'SpectralIndices' class in the main module
Started implementing the new module to post-process fitting to spectral indices / integrated fluxes / EWs
Using the new class 'ObservedCatalogue'
Added new module containing a generic 'observed catalogue'
Changed mail address
Removed support for python 2.6

0.5.20 (October 02, 2018)

The font size in the triangle plots can now be set using the '--fontsize' command-line option; for aesthetical reasons, reduced the number of tick marks and tick labels in the triangle plots
In the absence of a JSON file, the summary catalogue is now computed by default for the 'POSTERIOR PDF' extension

0.5.19 (September 05, 2018)

Removing LaTeX package aas_macros.sty, deals with #34

0.5.18 (September 05, 2018)

Included matplotlib configuration directly inside the package, to avoid the need of having to customize the matplotlibrc configuration file

0.5.17 (August 28, 2018)

Specifying astropy version, otherwise the installation will fail, closes #33

0.5.16 (August 02, 2018)

Added option to show labels of photometric filters in the marginal plot

0.5.15 (August 01, 2018)

Bug fix: pyp_beagle was crashing when the filter throughputs curves were passed via the 'fileName:' token inside the filter configuration file, in the absence of the 'FILTERS THROUGHPUTS' FITS file

0.5.14 (July 30, 2018)

Updated dependencies
Allow spectra without a redshift header keyword to be correctly processed
Added version file

0.5.13 (July 06, 2018)

Introduced possibility to use multiprocessing to speed up the calculation of the summary catalogue; added natural sorting or rows in the summary catalogue
Added dependency on 'natsort' package for natural sorting
Renamed 'np' variable to 'n_proc' to avoid confusion with numpy ---> np