From d31f6b3a82fbb80cc6dc57e8a0e633e71bd08b30 Mon Sep 17 00:00:00 2001 From: Paul Melnikow Date: Thu, 16 Dec 2021 18:17:33 -0500 Subject: [PATCH 1/2] Show points as spheres --- poetry.lock | 369 +++++++++++++++++++---------------- pyproject.toml | 2 +- tri_again/_collada.py | 15 +- tri_again/_scene.py | 11 ++ tri_again/_scene_internal.py | 3 +- tri_again/_shapes.py | 100 ++++++++++ tri_again/test_collada.py | 6 + tri_again/test_shapes.py | 59 ++++++ 8 files changed, 399 insertions(+), 166 deletions(-) create mode 100644 tri_again/_shapes.py create mode 100644 tri_again/test_shapes.py diff --git a/poetry.lock b/poetry.lock index 2e288cd..c687dbd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -73,7 +73,7 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "certifi" -version = "2021.5.30" +version = "2021.10.8" description = "Python package for providing Mozilla's CA Bundle." category = "dev" optional = false @@ -81,7 +81,7 @@ python-versions = "*" [[package]] name = "charset-normalizer" -version = "2.0.6" +version = "2.0.9" description = "The Real First Universal Charset Detector. 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See # https://github.com/lace/tri-again/issues/25 python = ">=3.7,<3.9" +lacecore = ">=2.3.0,<3" numpy = "*" polliwog = ">=2.0.0,<3" pycollada = ">=0.7.1,<0.8" @@ -39,7 +40,6 @@ coverage = "5.5" executor = "23.2" flake8 = "3.9.2" flake8-import-order = "0.18.1" -lacecore = "2.0.0" myst-parser = "0.15.1" pytest = "6.2.4" pytest-cov = "2.12.1" diff --git a/tri_again/_collada.py b/tri_again/_collada.py index b4ec3b9..8e54742 100644 --- a/tri_again/_collada.py +++ b/tri_again/_collada.py @@ -13,6 +13,7 @@ Mesh as InternalMesh, Point as InternalPoint, ) +from ._shapes import sphere def create_material(collada, name, color=(1, 1, 1)): @@ -144,11 +145,23 @@ def collada_from_scene(scene, name="triagain"): [ child for child in scene.children - if isinstance(child, InternalPoint) + if isinstance(child, InternalPoint) and child.radius is None ], ).items() ) ] + + [ + geometry_node_from_mesh( + collada=collada, + mesh=sphere(radius=child.radius, center=child.point), + name=f"point_as_sphere_{i}", + ) + for i, child in enumerate( + child + for child in scene.children + if isinstance(child, InternalPoint) and child.radius is not None + ) + ] ) scene = Scene(name, [Node("root", children=geometry_nodes)]) diff --git a/tri_again/_scene.py b/tri_again/_scene.py index 372cfd6..1232cca 100644 --- a/tri_again/_scene.py +++ b/tri_again/_scene.py @@ -72,6 +72,17 @@ def add_points(self, *points, name=None, color="red"): self.children.append(Point(point, name=name, color=color)) return self + def add_points_as_spheres(self, *points, radius=None, name=None, color="red"): + if len(points) > 0 and name is not None: + raise ValueError( + "When more than one point is provided, expected `name` to be None" + ) + if radius is None: + raise ValueError("radius is required") + for point in points: + self.children.append(Point(point, radius=radius, name=name, color=color)) + return self + def write(self, filename): """ Write a COLLADA file for this scene. diff --git a/tri_again/_scene_internal.py b/tri_again/_scene_internal.py index 161a6e6..e46b4f7 100644 --- a/tri_again/_scene_internal.py +++ b/tri_again/_scene_internal.py @@ -21,10 +21,11 @@ def __init__(self, polyline, color): class Point(Object): - def __init__(self, point, color, name=None): + def __init__(self, point, color, radius=None, name=None): # Validate. normalize_color(color) self.point = point self.name = name + self.radius = radius self.color = color diff --git a/tri_again/_shapes.py b/tri_again/_shapes.py new file mode 100644 index 0000000..06304fb --- /dev/null +++ b/tri_again/_shapes.py @@ -0,0 +1,100 @@ +import math +from lacecore import Mesh +import numpy as np +from vg.compat import v2 as vg + +# Adapted from https://medium.com/@oscarsc/four-ways-to-create-a-mesh-for-a-sphere-d7956b825db4 + + +def subdivide(mesh, project_to_unit_sphere=False): + """ + Args: + project_to_unit_sphere (boolean): When True, project new vertices to the + unit sphere. This is useful for `sphere()` below. + """ + triangles = mesh.v[mesh.f] + new_v = np.concatenate( + [ + np.average(triangles[:, 0:2], axis=1), # Midpoint of AB. + np.average(triangles[:, 1:3], axis=1), # Midpoint of BC. + np.average(triangles[:, 0:3:2], axis=1), # Midpoint of AC. + ] + ) + if project_to_unit_sphere: + new_v = vg.normalize(new_v) + new_v = np.concatenate([mesh.v, new_v]) + + new_f = np.zeros((0, 3), dtype=np.int64) + for i, (a, b, c) in enumerate(mesh.f): + # d: First midpoint of AB. + # e: First midpoint of BC. + # f: First midpoint of AC. + d, e, f = mesh.num_v + np.arange(3) * len(triangles) + i + new_f = np.vstack( + [ + new_f, + [a, d, f], + [d, b, e], + [e, c, f], + [d, e, f], + ] + ) + return Mesh(v=new_v, f=new_f) + + +def sphere(center, radius): + vg.shape.check(locals(), "center", (3,)) + + t = (1 + math.sqrt(5)) / 2 + vertices = vg.normalize( + np.array( + [ + [-1, t, 0], + [1, t, 0], + [-1, -t, 0], + [1, -t, 0], + [0, -1, t], + [0, 1, t], + [0, -1, -t], + [0, 1, -t], + [t, 0, -1], + [t, 0, 1], + [-t, 0, -1], + [-t, 0, 1], + ] + ) + ) + faces = np.array( + [ + [0, 11, 5], + [0, 5, 1], + [0, 1, 7], + [0, 7, 10], + [0, 10, 11], + [1, 5, 9], + [5, 11, 4], + [11, 10, 2], + [10, 7, 6], + [7, 1, 8], + [3, 9, 4], + [3, 4, 2], + [3, 2, 6], + [3, 6, 8], + [3, 8, 9], + [4, 9, 5], + [2, 4, 11], + [6, 2, 10], + [8, 6, 7], + [9, 8, 1], + ] + ) + return ( + subdivide( + subdivide(Mesh(v=vertices, f=faces), project_to_unit_sphere=True), + project_to_unit_sphere=True, + ) + .transform() + .uniform_scale(radius) + .translate(center) + .end() + ) diff --git a/tri_again/test_collada.py b/tri_again/test_collada.py index 2cd0c3e..5cfcbd3 100644 --- a/tri_again/test_collada.py +++ b/tri_again/test_collada.py @@ -28,6 +28,12 @@ def test_example(): .add_points( np.array([0.0, 0.0, 0.6]), np.array([5.0, 0.0, 0.2]), color="SeaGreen" ) + .add_points_as_spheres( + np.array([0.0, 0.0, 0.9]), + np.array([5.0, 0.0, 0.3]), + radius=0.1, + color="blue", + ) ) scene.write("example.dae") diff --git a/tri_again/test_shapes.py b/tri_again/test_shapes.py new file mode 100644 index 0000000..4bd738b --- /dev/null +++ b/tri_again/test_shapes.py @@ -0,0 +1,59 @@ +from lacecore import Mesh, shapes +import numpy as np +from ._shapes import sphere as create_sphere, subdivide +from . import Scene + + +def test_subdivide_square(): + cube = shapes.cube(np.zeros(3), 1.0) + just_a_square = Mesh(v=cube.v[:4], f=cube.f[:2]) + subdivided = subdivide(just_a_square) + + Scene().add_meshes(subdivided).write("subdivided_square.dae") + + np.testing.assert_array_equal( + subdivided.v, + np.array( + [ + [0.0, 0.0, 0.0], + [1.0, 0.0, 0.0], + [1.0, 0.0, 1.0], + [0.0, 0.0, 1.0], + [0.5, 0.0, 0.0], + [0.5, 0.0, 0.5], + [1.0, 0.0, 0.5], + [0.5, 0.0, 1.0], + [0.5, 0.0, 0.5], + [0.0, 0.0, 0.5], + ] + ), + ) + np.testing.assert_array_equal( + subdivided.f, + np.array( + [ + [0, 4, 8], + [4, 1, 6], + [6, 2, 8], + [4, 6, 8], + [0, 5, 9], + [5, 2, 7], + [7, 3, 9], + [5, 7, 9], + ] + ), + ) + + +def test_subdivide_cube(): + cube = shapes.cube(np.zeros(3), 1.0) + subdivided = subdivide(cube) + + Scene().add_meshes(subdivided).write("subdivided_cube.dae") + + +def test_sphere(): + sphere = create_sphere(np.zeros(3), 1.0) + subdivided = subdivide(sphere) + + Scene().add_meshes(subdivided).write("sphere.dae") From 5fb10b170b13e7916dfdbb9c2bd480b3ae6d30bf Mon Sep 17 00:00:00 2001 From: Jonathan Levin Date: Sat, 24 Sep 2022 11:33:25 -0400 Subject: [PATCH 2/2] update dependencies --- poetry.lock | 506 ++++++++++--------------------------------------- pyproject.toml | 4 +- 2 files changed, 106 insertions(+), 404 deletions(-) diff --git a/poetry.lock b/poetry.lock index 0605194..450ac1f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -16,7 +16,7 @@ python-versions = "*" [[package]] name = "atomicwrites" -version = "1.4.0" +version = "1.4.1" description = "Atomic file writes." category = "dev" optional = false @@ -38,7 +38,7 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (> [[package]] name = "babel" -version = "2.10.1" +version = "2.10.3" description = "Internationalization utilities" category = "dev" optional = false @@ -73,19 +73,19 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "certifi" -version = "2021.10.8" +version = "2022.9.24" description = "Python package for providing Mozilla's CA Bundle." category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "charset-normalizer" -version = "2.0.12" +version = "2.1.1" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false -python-versions = ">=3.5.0" +python-versions = ">=3.6.0" [package.extras] unicode_backport = ["unicodedata2"] @@ -104,7 +104,7 @@ importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "colorama" -version = "0.4.4" +version = "0.4.5" description = "Cross-platform colored terminal text." category = "dev" optional = false @@ -160,7 +160,7 @@ six = ">=1.9.0" [[package]] name = "fasteners" -version = "0.17.3" +version = "0.18" description = "A python package that provides useful locks" category = "dev" optional = false @@ -205,7 +205,7 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve [[package]] name = "idna" -version = "3.3" +version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" category = "dev" optional = false @@ -213,7 +213,7 @@ python-versions = ">=3.5" [[package]] name = "imagesize" -version = "1.3.0" +version = "1.4.1" description = "Getting image size from png/jpeg/jpeg2000/gif file" category = "dev" optional = false @@ -221,7 +221,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.11.3" +version = "4.12.0" description = "Read metadata from Python packages" category = "dev" optional = false @@ -234,7 +234,7 @@ zipp = ">=0.5" [package.extras] docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] [[package]] name = "iniconfig" @@ -260,7 +260,7 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "lacecore" -version = "2.3.0" +version = "3.0.0a0" description = "Polygonal meshes optimized for cloud computation" category = "main" optional = false @@ -269,7 +269,7 @@ python-versions = ">=3.7,<4" [package.dependencies] numpy = "<1.19.0" ounce = ">=1.1.0,<2.0" -polliwog = ">=2.1.0,<3.0" +polliwog = ">=3.0.0a3" vg = ">=2.0.0" [package.extras] @@ -288,12 +288,12 @@ attrs = ">=19,<22" typing-extensions = {version = ">=3.7.4", markers = "python_version < \"3.8\""} [package.extras] -code_style = ["pre-commit (==2.6)"] -compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.2.2,<3.3.0)", "mistletoe-ebp (>=0.10.0,<0.11.0)", "mistune (>=0.8.4,<0.9.0)", "panflute (>=1.12,<2.0)"] -linkify = ["linkify-it-py (>=1.0,<2.0)"] +testing = ["pytest-regressions", "pytest-cov", "pytest-benchmark (>=3.2,<4.0)", "pytest (>=3.6,<4)", "psutil", "coverage"] +rtd = ["sphinx-book-theme", "sphinx-panels (>=0.4.0,<0.5.0)", "sphinx-copybutton", "sphinx (>=2,<4)", "pyyaml", "myst-nb (==0.13.0a1)"] plugins = ["mdit-py-plugins"] -rtd = ["myst-nb (==0.13.0a1)", "pyyaml", "sphinx (>=2,<4)", "sphinx-copybutton", "sphinx-panels (>=0.4.0,<0.5.0)", "sphinx-book-theme"] -testing = ["coverage", "psutil", "pytest (>=3.6,<4)", "pytest-benchmark (>=3.2,<4.0)", "pytest-cov", "pytest-regressions"] +linkify = ["linkify-it-py (>=1.0,<2.0)"] +compare = ["panflute (>=1.12,<2.0)", "mistune (>=0.8.4,<0.9.0)", "mistletoe-ebp (>=0.10.0,<0.11.0)", "markdown (>=3.2.2,<3.3.0)", "commonmark (>=0.9.1,<0.10.0)"] +code_style = ["pre-commit (==2.6)"] [[package]] name = "markupsafe" @@ -323,9 +323,9 @@ python-versions = "~=3.6" markdown-it-py = ">=1.0,<2.0" [package.extras] +testing = ["pytest-regressions", "pytest-cov", "pytest (>=3.6,<4)", "coverage"] +rtd = ["sphinx-book-theme (>=0.1.0,<0.2.0)", "myst-parser (==0.14.0a3)"] code_style = ["pre-commit (==2.6)"] -rtd = ["myst-parser (==0.14.0a3)", "sphinx-book-theme (>=0.1.0,<0.2.0)"] -testing = ["coverage", "pytest (>=3.6,<4)", "pytest-cov", "pytest-regressions"] [[package]] name = "mypy-extensions" @@ -386,15 +386,15 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pathspec" -version = "0.9.0" +version = "0.10.1" description = "Utility library for gitignore style pattern matching of file paths." category = "dev" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +python-versions = ">=3.7" [[package]] name = "pbr" -version = "5.9.0" +version = "5.10.0" description = "Python Build Reasonableness" category = "dev" optional = false @@ -416,7 +416,7 @@ dev = ["pre-commit", "tox"] [[package]] name = "polliwog" -version = "2.4.0" +version = "3.0.0a4" description = "2D and 3D computational geometry library" category = "main" optional = false @@ -427,6 +427,9 @@ numpy = "<1.19.0" ounce = ">=1.1.0,<2.0" vg = ">=2.0.0" +[package.extras] +serialization = ["jsonschema (>=4,<5)", "simplejson (>=3,<4)"] + [[package]] name = "property-manager" version = "3.0" @@ -480,12 +483,15 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pygments" -version = "2.12.0" +version = "2.13.0" description = "Pygments is a syntax highlighting package written in Python." category = "dev" optional = false python-versions = ">=3.6" +[package.extras] +plugins = ["importlib-metadata"] + [[package]] name = "pyparsing" version = "3.0.9" @@ -564,7 +570,7 @@ six = ">=1.5" [[package]] name = "pytz" -version = "2022.1" +version = "2022.2.1" description = "World timezone definitions, modern and historical" category = "dev" optional = false @@ -580,7 +586,7 @@ python-versions = ">=3.6" [[package]] name = "regex" -version = "2022.4.24" +version = "2022.9.13" description = "Alternative regular expression module, to replace re." category = "dev" optional = false @@ -588,21 +594,21 @@ python-versions = ">=3.6" [[package]] name = "requests" -version = "2.27.1" +version = "2.28.1" description = "Python HTTP for Humans." category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">=3.7, <4" [package.dependencies] certifi = ">=2017.4.17" -charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} -idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} +charset-normalizer = ">=2,<3" +idna = ">=2.5,<4" urllib3 = ">=1.21.1,<1.27" [package.extras] -socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] +socks = ["PySocks (>=1.5.6,!=1.5.7)"] +use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "six" @@ -672,8 +678,8 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-devhelp" @@ -684,8 +690,8 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-htmlhelp" @@ -696,8 +702,8 @@ optional = false python-versions = ">=3.6" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] -test = ["pytest", "html5lib"] +test = ["html5lib", "pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-jsmath" @@ -708,7 +714,7 @@ optional = false python-versions = ">=3.5" [package.extras] -test = ["pytest", "flake8", "mypy"] +test = ["mypy", "flake8", "pytest"] [[package]] name = "sphinxcontrib-qthelp" @@ -719,8 +725,8 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] +lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-serializinghtml" @@ -752,7 +758,7 @@ python-versions = ">=3.5" [[package]] name = "typed-ast" -version = "1.5.3" +version = "1.5.4" description = "a fork of Python 2 and 3 ast modules with type comment support" category = "dev" optional = false @@ -760,7 +766,7 @@ python-versions = ">=3.6" [[package]] name = "typing-extensions" -version = "4.2.0" +version = "4.3.0" description = "Backported and Experimental Type Hints for Python 3.7+" category = "dev" optional = false @@ -768,15 +774,15 @@ python-versions = ">=3.7" [[package]] name = "urllib3" -version = "1.26.9" +version = "1.26.12" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4" [package.extras] brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"] -secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] +secure = ["pyOpenSSL (>=0.14)", 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