Support for Python 3.12

[dmichaels-harvard]

No description provided.

[willronchetti]

Alex V should deploy/test this out before merging

[willronchetti]

I've just realized this build is not defined correctly - you can re-use all the below by using the matrix syntax, see https://github.com/4dn-dcic/utils/blob/master/.github/workflows/main.yml#L24-L26 as an example

[alexander-veit]

I am getting SyntaxWarnings at various places when using Python 3.12, e.g.,

/home/ubuntu/GitHub/tibanna/tibanna/awsem.py:396: SyntaxWarning: invalid escape sequence '\.'
  filename = re.match('(.+)\.{0}$'.format(unzip), filename).group(1)

This is exptected with Python 3.12: https://docs.python.org/dev/whatsnew/3.12.html#other-language-changes
I think we need to use raw strings instead.

[alexander-veit]

I deployed it and ran a test workflow and everything seems to work for Python 3.12. I would just modify the regex expressions to avoid the syntax warnings, e.g., replace

filename = re.match('(.+)\.{0}$'.format(unzip), filename).group(1)

with

filename = re.match(r'(.+)\.{0}$'.format(unzip), filename).group(1)