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retrieve main changes to dev branch #19

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Mar 7, 2024
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retrieve main changes to dev branch #19

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919bbe2
Merge pull request #16 from GfellerLab/dev_seuratV5_V4compatible
aurelieGabriel Dec 21, 2023
60f3176
Merge pull request #17 from GfellerLab/dev_seuratV5_V4compatible
aurelieGabriel Dec 21, 2023
2efeaaa
Update 10-intro.md
mariiabilous Jan 5, 2024
e03dfe4
Update introduction-to-the-metacell-concept.html
mariiabilous Jan 5, 2024
2c2aab6
Update 10-intro.Rmd
mariiabilous Jan 5, 2024
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Update 10-intro.Rmd
mariiabilous Jan 5, 2024
1eee407
Merge pull request #18 from GfellerLab/dev_seuratV5_V4compatible
aurelieGabriel Jan 5, 2024
87bf1bb
fix introduction-to-the-metacell-concept.html as automatically rendered
aurelieGabriel Jan 5, 2024
aa8d73f
Update README.md
mariiabilous Feb 8, 2024
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2 changes: 1 addition & 1 deletion README.md
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This repository serves as the source code for the [Metacell Analysis Tutorial](https://GfellerLab.github.io/MetacellAnalysisTutorial).

This tutorial is a part of our [study](XXX ADD LINK) on the use of the metacell concept in single-cell genomics.
This tutorial is a part of our [study](https://doi.org/10.1101/2024.02.04.578815) on the use of the metacell concept in single-cell genomics.
2 changes: 1 addition & 1 deletion docs/10-intro.md
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Expand Up @@ -6,7 +6,7 @@ This concept relies on the assumption that most of the variability within metace
Using metacells enables users to: (i) remove some of the noise while preserving and enhancing biological signal in sparse single-cell genomics data and,
(ii) address computational challenges due to the large size of these data.

![The metacell concept.](images/figure1.png)
![The metacell concept.](../images/figure1.png)

Several studies have been built upon the metacell concept. In this tutorial, we consider three tools providing standalone metacell construction frameworks and
describe the different steps that should be followed to build metacells using these tools:
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