Dev/setup jatic cicd #28
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This is a basic workflow to help you get started with Actions | |
| name: Unit Testing | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: | |
| - master | |
| - release | |
| pull_request: | |
| branches: | |
| - master | |
| - release | |
| - update-to-v* | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| # NOTE: Github actions does not support anchors apparently. Forgive duplication of job | |
| # steps. | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9","3.10","3.11","3.12"] | |
| # Extras for included, optional plugin support (space-separated lists) | |
| opt-extra: [ | |
| "", # no extras | |
| "tools", | |
| ] | |
| # We want all python versions tested even if one of them happens to fail | |
| fail-fast: false | |
| container: python:${{ matrix.python-version }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v4 | |
| id: env-cache | |
| with: | |
| path: | | |
| ~/.cache | |
| key: python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }}-${{ matrix.opt-extra }} | |
| restore-keys: | | |
| python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| uses: ./.github/actions/test-stage | |
| with: | |
| extras: "${{ matrix.opt-extra }}" | |
| - name: Unit Testing | |
| run: poetry run pytest | |
| - name: CodeCov report submission | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true | |
| files: coverage.xml | |
| flags: unittests | |
| notebooks: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| notebook-file: [ | |
| "atari_deepRL_saliency.ipynb", | |
| "DRISE.ipynb", | |
| "MNIST_scikit_saliency.ipynb", | |
| "OcclusionSaliency.ipynb", | |
| "Radial_Image_Perturbation.ipynb", | |
| "SimilarityScoring.ipynb", | |
| "SuperPixelSaliency.ipynb", | |
| "VIAME_OcclusionSaliency.ipynb", | |
| "SerializedDetectionSaliency.ipynb", | |
| # Model comparison example is excluded due to computational complexity | |
| #"ModelComparisonWithSaliency.ipynb", | |
| ] | |
| # We want all python versions tested even if one of them happens to fail | |
| fail-fast: false | |
| # Just one python version, using our base supported version. | |
| container: | |
| image: python:3.9 | |
| options: "--shm-size 2GB" | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v2 | |
| id: env-cache | |
| with: | |
| path: | | |
| ~/.cache | |
| # Using a different key due to additional things the notebook | |
| # examples ad-hoc install. | |
| key: python-3.9-${{ hashFiles('poetry.lock') }}-Examples | |
| restore-keys: | | |
| python-3.9-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| uses: ./.github/actions/test-stage | |
| with: | |
| extras: "tools example_deps" | |
| - uses: actions/cache@v2 | |
| id: notebook-data-cache | |
| with: | |
| path: | | |
| ~/.cache/ | |
| examples/data/ | |
| key: python-3.9-${{ hashFiles('poetry.lock') }}-ExampleData-${{ matrix.notebook-file }} | |
| # pretty unique, no restore-keys. | |
| - name: Run Notebook | |
| run: | | |
| cd examples | |
| poetry run papermill \ | |
| --progress-bar \ | |
| -k python3 \ | |
| --stdout-file - --stderr-file - \ | |
| "${{ matrix.notebook-file }}" /dev/null |