new content from pmc

figures/PMC10266254__jcav14p1660g005.yml

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+---
+pmcid: PMC10266254
+image_filename: jcav14p1660g005.jpg
+figure_link: /pmc/articles/PMC10266254/figure/F5/
+number: Figure 5
+figure_title: ''
+caption: Protein-protein interaction network analysis of genes from different gene
+  sets using the STRING online database and visualization using Cytoscape software.
+  (A, B) PPI network analysis and Cytoscape analysis of gene sets that are positively
+  associated with the tumour. (C, D) PPI network analysis and Cytoscape analysis of
+  gene sets negatively associated with the tumour.
+article_title: PLAU and LAMC2 can predict a poor prognosis in patients with HNSCC.
+citation: Zhi-chen Guo, et al. J Cancer. 2023;14(9):1660-1672.
+
+doi: 10.7150/jca.84407
+journal_title: Journal of Cancer
+journal_nlm_ta: J Cancer
+publisher_name: Ivyspring International Publisher
+
+keywords:
+---

figures/PMC10603271__fphar-14-1255809-g006.yml

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+---
+pmcid: PMC10603271
+image_filename: fphar-14-1255809-g006.jpg
+figure_link: /pmc/articles/PMC10603271/figure/F6/
+number: FIGURE 6
+figure_title: ''
+caption: SSTRs and SSTR-associated molecules co-expressed in COAD and their predicted
+  functions and signaling pathways. (A) The cBioPortal database was used to identify
+  the 178 SSTR-associated co-expressed molecules that are most frequently altered
+  in COAD. SSTR family members and their associated co-expressed genes were used to
+  generate the PPI network using the Cytoscape database. (B–F) Functional enrichment
+  analysis was used to analyze the biological functions of the SSTR family members
+  and their co-expressed genes. COAD, colon adenocarcinoma; PPI, protein–protein interaction;
+  SSTRs, somatostatin receptors.
+article_title: Immunological role and prognostic value of somatostatin receptor family
+  members in colon adenocarcinoma.
+citation: Xiaoqian Yu, et al. Front Pharmacol. 2023;14:1255809.
+
+doi: 10.3389/fphar.2023.1255809
+journal_title: Frontiers in Pharmacology
+journal_nlm_ta: Front Pharmacol
+publisher_name: Frontiers Media S.A.
+
+keywords:
+- SSTR family
+- colon adenocarcinoma
+- prognosis
+- immune infiltration
+- immunotherapy
+- therapeutic target
+
+---

figures/PMC10614246__ger-2023-0069-0010-531287_F03.yml

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+---
+pmcid: PMC10614246
+image_filename: ger-2023-0069-0010-531287_F03.jpg
+figure_link: /pmc/articles/PMC10614246/figure/F3/
+number: Fig. 3
+figure_title: ''
+caption: a PPI network of 23 identified genes. b PPI network of 23 identified genes
+  via Cytoscape. The redder colors represent higher degree according to the MCC algorithm.
+  c Rank of 23 genes according to the MCC algorithm. PPI, protein-protein interaction;
+  MCC, maximal clique centrality.
+article_title: Identification and Validation of an Aging-Associated circRNA-miRNA-mRNA
+  Network in Neovascular Age-Related Macular Degeneration.
+citation: Jiali Wu, et al. Gerontology. 2023 Oct;69(10):1218-1231.
+
+doi: 10.1159/000531287
+journal_title: Gerontology
+journal_nlm_ta: Gerontology
+publisher_name: S. Karger AG
+
+keywords:
+- Age-related macular degeneration
+- Aging
+- Circular RNA
+- MicroRNA
+
+---

figures/PMC10614389__12967_2023_4644_Fig10_HTML.yml

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+---
+pmcid: PMC10614389
+image_filename: 12967_2023_4644_Fig10_HTML.jpg
+figure_link: /pmc/articles/PMC10614389/figure/Fig10/
+number: Fig. 10
+figure_title: ''
+caption: 'RECK modulates the expression level of CALD1 via influencing the phosphorylation
+  level of ERK. A The PPI network based on genes associated with RECK was constructed
+  by the STRING platform and Cytoscape 3.9 software. B The bar plot depicts the number
+  of adjacent nodes per gene according to the STRING platform. C Three genes from
+  the PPI network were directly related to RECK. Cor: the coefficient for correlation
+  analysis. Score: combined score derived from STRING platform. D–F The downregulation
+  of CALD1 in GC was verified by qRT-PCR, Western blot analysis, and immunohistochemical
+  assay from the Human Protein Atlas (HPA). G The phosphorylation level of CALD1 was
+  performed by Western blot analysis in AGS and HGC-27 cells with the treatment of
+  TBHQ or PD98059. H The effect of alterations in RECK gene expression on the phosphorylation
+  level of CALD1 in AGS and HGC-27 cells (*p < 0.05, **p < 0.01, ***p < 0.001, ns = not
+  significant)'
+article_title: Identification of RECK as a protective prognostic indicator and a tumor
+  suppressor through regulation of the ERK/MAPK signaling pathway in gastric cancer.
+citation: Fangyuan Qi, et al. J Transl Med. 2023;21:766.
+
+doi: 10.1186/s12967-023-04644-z
+journal_title: Journal of Translational Medicine
+journal_nlm_ta: J Transl Med
+publisher_name: BioMed Central
+
+keywords:
+- Gastric cancer
+- RECK
+- Tumor suppressor
+- ERK/MAPK
+- CALD1
+
+---

figures/fetch.log

@@ -1,2 +1,2 @@
-https://www.ncbi.nlm.nih.gov/pmc/?term=(network-OR-PPI+cytoscape)+AND+(2023/09/01[PUBDATE]+%3A+3000/01/01[PUBDATE])&report=imagesdocsum&dispmax=100
- 10 results
+https://www.ncbi.nlm.nih.gov/pmc/?term=(network-OR-PPI+cytoscape)+AND+(2023/10/01[PUBDATE]+%3A+3000/01/01[PUBDATE])&report=imagesdocsum&dispmax=100
+ 4 results

query_config.yml

@@ -1,5 +1,5 @@
 terms:
 - network OR PPI
 - cytoscape
-last_run: 2023/10/01
+last_run: 2023/11/01
 date_range: ~