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ENH: Use macos-13 now to avoid disruption when macos-12 is retired #283

ENH: Use macos-13 now to avoid disruption when macos-12 is retired

ENH: Use macos-13 now to avoid disruption when macos-12 is retired #283

name: Build, test, package
on: [push,pull_request]
env:
itk-git-tag: "v5.4.0"
itk-wheel-tag: "v5.4.0"
# v5.4.0 + fixes
itk-python-package-tag: "c9bb40bcb9f99938d071435e46f44d3d2b389482"
itk-python-package-org: "InsightSoftwareConsortium"
ctest-options: ""
jobs:
build-test-cxx:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-22.04, windows-2022, macos-13, macos-14]
include:
- os: ubuntu-22.04
c-compiler: "gcc"
cxx-compiler: "g++"
cmake-build-type: "MinSizeRel"
- os: windows-2022
c-compiler: "cl.exe"
cxx-compiler: "cl.exe"
cmake-build-type: "Release"
- os: macos-13
c-compiler: "clang"
cxx-compiler: "clang++"
cmake-build-type: "MinSizeRel"
- os: macos-14
c-compiler: "clang"
cxx-compiler: "clang++"
cmake-build-type: "MinSizeRel"
steps:
- uses: actions/checkout@v4
- name: Free Disk Space (Ubuntu)
if: matrix.os == 'ubuntu-22.04'
uses: jlumbroso/[email protected]
with:
large-packages: false
- name: Set up Python 3.11
uses: actions/setup-python@v5
with:
python-version: "3.11"
- uses: shogo82148/actions-setup-perl@v1
- uses: ilammy/setup-nasm@v1
- name: Get specific version of CMake, Ninja
uses: lukka/[email protected]
- name: 'Specific XCode version'
if: matrix.os == 'macos-13'
run: |
sudo xcode-select -s "/Applications/Xcode_14.3.1.app"
- name: 'Specific XCode version'
if: matrix.os == 'macos-14'
run: |
sudo xcode-select -s "/Applications/Xcode_15.0.1.app"
- name: Download ITK
run: |
cd ..
git clone https://github.com/InsightSoftwareConsortium/ITK.git
cd ITK
git checkout ${{ env.itk-git-tag }}
- name: Build ITK
if: matrix.os != 'windows-2022'
run: |
cd ..
mkdir ITK-build
cd ITK-build
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
ninja
- name: Build ITK
if: matrix.os == 'windows-2022'
shell: pwsh
run: |
Set-PSDebug -Trace 1
cd ..
& "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation
mkdir ITK-build
cd ITK-build
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
ninja
- name: Fetch CTest driver script
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O
- name: Configure CTest script
shell: bash
run: |
operating_system="${{ matrix.os }}"
cat > dashboard.cmake << EOF
set(CTEST_SITE "GitHubActions")
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY)
set(dashboard_source_name "${GITHUB_REPOSITORY}")
if((ENV{GITHUB_REF_NAME} MATCHES "master" OR ENV{GITHUB_REF_NAME} MATCHES "main"))
set(branch "-master")
set(dashboard_model "Continuous")
else()
set(branch "-${GITHUB_REF}")
set(dashboard_model "Experimental")
endif()
set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}")
set(CTEST_UPDATE_VERSION_ONLY 1)
set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
set(CTEST_BUILD_CONFIGURATION "Release")
set(CTEST_CMAKE_GENERATOR "Ninja")
set(CTEST_CUSTOM_WARNING_EXCEPTION
\${CTEST_CUSTOM_WARNING_EXCEPTION}
# macOS Azure VM Warning
"ld: warning: text-based stub file"
"Wunused-result"
"file: .+ has no symbols"
"Wpointer-bool-conversion"
"note: prefix with the address-of operator to silence this warning"
"warning C4722: 'riegeli::internal::UnreachableStream::~UnreachableStream': destructor never returns, potential memory leak"
"warning C4722: 'riegeli::internal::CheckFailed::~CheckFailed': destructor never returns, potential memory leak"
"_deps[/\\\\].+-src[/\\\\]" # disable all warnings from external projects
"_deps[/\\\\].+-build[/\\\\]" # disable all warnings from external projects
# the following warnings escape the above filter
"warning: Import validate/validate.proto is unused"
"warning:.+__builtin___memcpy_chk"
"warning:.+__builtin_memchr"
"warning:.+__builtin_memcpy"
"ld: warning: ignoring duplicate libraries:.+"
"cc1plus: warning: writing 16 bytes into a region of size 0"
"note: source object allocated here"
)
set(dashboard_no_clean 1)
set(ENV{CC} ${{ matrix.c-compiler }})
set(ENV{CXX} ${{ matrix.cxx-compiler }})
if(WIN32)
set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}")
endif()
set(dashboard_cache "
ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build
BUILD_TESTING:BOOL=ON
")
string(TIMESTAMP build_date "%Y-%m-%d")
message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
message("CTEST_SITE = \${CTEST_SITE}")
include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
EOF
cat dashboard.cmake
- name: Build and test
if: matrix.os != 'windows-2022'
run: |
ctest --output-on-failure -j 2 -VV -S dashboard.cmake ${{ env.ctest-options }}
- name: Build and test
if: matrix.os == 'windows-2022'
shell: pwsh
run: |
& "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation
ctest --output-on-failure -j 2 -VV -S dashboard.cmake ${{ env.ctest-options }}
build-linux-py:
runs-on: ubuntu-22.04
strategy:
max-parallel: 2
matrix:
python3-minor-version: ["8", "9", "10", "11"]
manylinux-platform: ["_2_28-x64"]
steps:
- uses: actions/checkout@v4
- name: Get specific version of CMake, Ninja
uses: lukka/[email protected]
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/[email protected]
with:
large-packages: false
- uses: shogo82148/actions-setup-perl@v1
- uses: ilammy/setup-nasm@v1
- name: 'Fetch build script'
run: |
IPP_DOWNLOAD_GIT_TAG=${{ env.itk-python-package-tag }}
IPP_DOWNLOAD_ORG=${{ env.itk-python-package-org }}
curl -L https://raw.githubusercontent.com/${IPP_DOWNLOAD_ORG:=InsightSoftwareConsortium}/ITKPythonPackage/${IPP_DOWNLOAD_GIT_TAG:=master}/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh -O
chmod u+x dockcross-manylinux-download-cache-and-build-module-wheels.sh
- name: 'Build 🐍 Python πŸ“¦ package'
shell: bash
run: |
rm -rf dist
export ITK_PACKAGE_VERSION=${{ env.itk-wheel-tag }}
export ITKPYTHONPACKAGE_TAG=${{ env.itk-python-package-tag }}
export ITKPYTHONPACKAGE_ORG=${{ env.itk-python-package-org }}
export ITK_MODULE_PREQ=
CMAKE_OPTIONS=""
MANYLINUX_PLATFORM=${{ matrix.manylinux-platform }}
echo "Manylinux platform ${MANYLINUX_PLATFORM}"
rm -rf ITKPythonPackage
export MANYLINUX_VERSION=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 1)`
export TARGET_ARCH=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 2)`
echo "Building for manylinux specialization ${MANYLINUX_VERSION} and target architecture ${TARGET_ARCH}"
./dockcross-manylinux-download-cache-and-build-module-wheels.sh cp3${{ matrix.python3-minor-version }} $CMAKE_OPTIONS
- name: Set up Python 3.11 for Validation
uses: actions/setup-python@v5
with:
python-version: "3.11"
- name: Validate build output
shell: bash
run: |
python -m pip install twine
ls dist/
MANYLINUX_PLATFORM=${{ matrix.manylinux-platform }}
MANYLINUX_VERSION=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 1)`
TARGET_ARCH_NAME=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 2)`
if [[ ${TARGET_ARCH_NAME} == "x64" ]]; then
TARGET_ARCH_NAME="x86_64" # Match auditwheel naming convention
fi
WHEEL_PATTERN="dist/itk_*cp3${{ matrix.python3-minor-version }}*manylinux${MANYLINUX_VERSION}*${TARGET_ARCH_NAME}.whl"
echo "Searching for wheels matching pattern ${WHEEL_PATTERN}"
python -m twine check ${WHEEL_PATTERN}
- name: Publish Python package as GitHub Artifact
uses: actions/upload-artifact@v4
with:
name: LinuxWheel3${{ matrix.python3-minor-version }}${{ matrix.manylinux-platform }}
path: dist/*.whl
- name: Publish Python package as GitHub Artifact
uses: actions/upload-artifact@v4
with:
name: MacOSWheel3${{ matrix.python3-minor-version }}
path: dist/*.whl
build-macos-arm-py:
runs-on: macos-14
strategy:
max-parallel: 2
matrix:
python3-minor-version: ["9", "10", "11"]
steps:
- uses: actions/checkout@v4
- name: 'Specific XCode version'
run: |
sudo xcode-select -s "/Applications/Xcode_15.0.1.app"
- name: Get specific version of CMake, Ninja
uses: lukka/[email protected]
- uses: shogo82148/actions-setup-perl@v1
- uses: ilammy/setup-nasm@v1
- name: 'Fetch build script'
if: matrix.python3-minor-version != '8'
run: |
IPP_DOWNLOAD_GIT_TAG=${{ env.itk-python-package-tag }}
IPP_DOWNLOAD_ORG=${{ env.itk-python-package-org }}
curl -L https://raw.githubusercontent.com/${IPP_DOWNLOAD_ORG:=InsightSoftwareConsortium}/ITKPythonPackage/${IPP_DOWNLOAD_GIT_TAG:=master}/scripts/macpython-download-cache-and-build-module-wheels.sh -O
chmod u+x macpython-download-cache-and-build-module-wheels.sh
- name: 'Build 🐍 Python πŸ“¦ package'
if: matrix.python3-minor-version != '8'
shell: bash
run: |
rm -rf dist
export ITK_PACKAGE_VERSION=${{ env.itk-wheel-tag }}
export ITKPYTHONPACKAGE_TAG=${{ env.itk-python-package-tag }}
export ITKPYTHONPACKAGE_ORG=${{ env.itk-python-package-org }}
export ITK_MODULE_PREQ=
export MACOSX_DEPLOYMENT_TARGET=11.0
SCMAKE_OPTIONS=""
./macpython-download-cache-and-build-module-wheels.sh $CMAKE_OPTIONS "3.${{ matrix.python3-minor-version }}"
- name: Set up Python 3.11 for Validation
uses: actions/setup-python@v5
with:
python-version: "3.11"
- name: Validate build output
if: matrix.python3-minor-version != '8'
shell: bash
run: |
python -m pip install twine
ls dist/
WHEEL_PATTERN="dist/itk_*macosx*.whl"
EXPECTED_WHEEL_COUNT=1
WHEEL_COUNT=`(ls ${WHEEL_PATTERN} | wc -l)`
if (( ${WHEEL_COUNT} != ${EXPECTED_WHEEL_COUNT} )); then
echo "Expected ${EXPECTED_WHEEL_COUNT} wheels but found ${WHEEL_COUNT}"
exit 1
fi
python -m twine check ${WHEEL_PATTERN}
- name: Publish Python package as GitHub Artifact
if: matrix.python3-minor-version != '8'
uses: actions/upload-artifact@v4
with:
name: MacOSArmWheel3${{ matrix.python3-minor-version }}
path: dist/*.whl
build-windows-python-packages:
runs-on: windows-2022
strategy:
max-parallel: 2
matrix:
python3-minor-version: ["8", "9", "10", "11"]
steps:
- name: Get specific version of CMake, Ninja
uses: lukka/[email protected]
- uses: actions/checkout@v4
with:
path: "im"
- name: 'Reduce source path length'
shell: bash
run: |
# Move checked-out source to a shorter path to avoid Windows path length issues
mv im ../../
- name: 'Fetch build script'
shell: pwsh
run: |
cd ../../im
$ITKPYTHONPACKAGE_TAG = "${{ env.itk-python-package-tag }}"
$ITKPYTHONPACKAGE_ORG = "${{ env.itk-python-package-org }}"
$SCRIPT_UPSTREAM = "https://raw.githubusercontent.com/$ITKPYTHONPACKAGE_ORG/ITKPythonPackage/$ITKPYTHONPACKAGE_TAG/scripts/windows-download-cache-and-build-module-wheels.ps1"
echo "Fetching $SCRIPT_UPSTREAM"
(new-object net.webclient).DownloadString($SCRIPT_UPSTREAM) > windows-download-cache-and-build-module-wheels.ps1
- uses: shogo82148/actions-setup-perl@v1
- uses: ilammy/setup-nasm@v1
- name: 'Build 🐍 Python πŸ“¦ package'
shell: pwsh
run: |
if (Test-Path dist) { rm dist -r -fo }
cd ../../im
& "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation
$env:CC="cl.exe"
$env:CXX="cl.exe"
$env:ITK_PACKAGE_VERSION = "${{ env.itk-wheel-tag }}"
$env:ITKPYTHONPACKAGE_TAG = "${{ env.itk-python-package-tag }}"
$env:ITKPYTHONPACKAGE_ORG = "${{ env.itk-python-package-org }}"
$env:ITK_MODULE_PREQ = ""
./windows-download-cache-and-build-module-wheels.ps1 "${{ matrix.python3-minor-version }}" -cmake_options ""
mkdir -p '${{ github.workspace }}\dist'
cp 'dist\*.whl' '${{ github.workspace }}\dist'
- name: Set up Python 3.11 for Validation
uses: actions/setup-python@v5
with:
python-version: "3.11"
- name: Validate build output
shell: pwsh
run: |
python -m pip install twine
ls dist/
$WHEEL_PATTERN = "dist/itk_*cp3${{ matrix.python3-minor-version }}*win*.whl"
echo "Searching for wheels matching pattern ${WHEEL_PATTERN}"
python -m twine check ${WHEEL_PATTERN}
- name: Publish Python package as GitHub Artifact
uses: actions/upload-artifact@v4
with:
name: WindowsWheel3${{ matrix.python3-minor-version }}
path: dist/*.whl
publish-python-packages-to-pypi:
needs:
- build-linux-py
- build-macos-arm-py
- build-windows-python-packages
runs-on: ubuntu-22.04
steps:
- name: Download Python Packages
uses: actions/download-artifact@v4
- name: Prepare packages for upload
run: |
ls -R
for d in */; do
mv ${d}/*.whl .
done
mkdir dist
mv *.whl dist/
ls dist
- name: Publish 🐍 Python πŸ“¦ package to PyPI
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
uses: pypa/[email protected]
with:
skip_existing: true
user: __token__
password: ${{ secrets.pypi_password }}