BedPE Support

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Jim Robinson edited this page Jun 18, 2019 · 2 revisions

Support for the "bedpe" format was added in release 2.6

Two primary use cases:

Interactions
Structural variants

Format variants

Original spec: bedtools
10X - spec compliant with additional columns

Rendering

Arcs
Blocks

10X files are recognized by looking for the following header line

#chrom1	start1	stop1	chrom2	start2	stop2	name	qual	strand1	strand2	filters	info